This feature from MPLAB 8 is not currently supported. MPLAB X has a fixed directory structure within your project directory. Intermediate files are always sent to one of two locations depending on whether you built for debug or built for release.
Adding an option for custom intermediates directories is on the list for possible future enhancements.
Production builds always store the intermediate files in the following subdirectory of your project:
Debug builds always store the intermediate files in the following subdirectory of your project:
In the above paths, MyProjectName is the name of your project and default is the name of the project configuration.
Microchip Technology acquires Atmel